Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915232.1_cds_XP_016465102.1_58079
CDS Infomation

[gene=LOC107787983] [db_xref=GeneID:107787983] [protein=protein ROOT PRIMORDIUM DEFECTIVE 1-like] [protein_id=XP_016465102.1] [location=complement(82793..84202)] [gbkey=CDS]
Sequence

ATGCACATTTTCCTTAAAATTTCTACAAAGCTCTTACAATCCAAATCCAAACCCTTCAAT
TCCCTCACATGGATCCCACCACTTTTCTTACAATCCACTAAACAAATGTCGCAGTCAACT
TCCATACCCAGAAACCAACAGCGCGTTCGCGACCACGGCTACGACGATTACATGGAAATT
GAAAAAAAAATCCGCAAAGTCATGAAATTCCAAGAACAGCTCCTCACTCAGACAAATTCA
ATGATCCCTATTTCTCGCCTTGACATGCTCGCTCGCCGTTTCGGGTTCAAACAATACGAA
GCAGGCAAGTTTATTCTCAAATTCCCTCATGTTTTTGAGGTTTTCGAACACCCAGTTCAG
AGAATACTTTATTGCAGGCTCACCCATAAAGCACTGCTTCAAATTGAGCAAGAAAAATTA
GCTCTTTTAGCTCAATTACCTGAAGCTGTAACCCGTTTAAGAAAGCTTCTAATGCTTTCT
AATACGGGGAGATTAAGGCTAGAACATGTTAGGATTGCAAGGAAAGAATTTGGTTTACCT
GATGATTTTGAGTTTTCTGTTGTTTTGAAGTATCCTATGTATTTTAGATTGTTTGATGCT
AAAGAGACTAGGAACAAGTACATTGAGGTTGTAGAGAAAGACCCGATGTTAGCTGTTTGT
GCCGTGGAGAGAGTTAGGGAGAAAGAGTATAGAGAAAAGGGTGGTGAAGAAGAAAATGTG
AGGTTTTATTTTAGGGTGAATTTCCCACCAGGTTTCAAGATTGGGAAGTATTATAAGATT
GCTGTTTGGAAATGGCAAAGGCTGCCTTATTGGTCGCCTTATGAGGATATCTCGGGTTAT
GATTTGAGGTCGCTCGAGGCACAGAAGAGGATGGAGAAGAGAGCAGTGGCCACTATCCAT
GAGTTGCTGTCATTGACGGTTGAAAAGAAGATTACTTTGGAGAGAATCGCGCATTTTAGG
TTGGCGATGGATTTGCCAAAGAAGCTGAAGGACTTTCTCCTTCAGCATCAGGGAATATTT
TATATCTCGACAAGGGGAAATCAGGGGAAATTGCATACGGTGTTTCTCAGGGAGGCTTAT
AGGAAGGGAGAGTTGATTGAGCCAAATGATCTGTATTTAGCTAGGAGAAGGCTGGCTGAG
TTGGTTTTGATGAGTCCAAGGAAAGCCAATATGGATAAAGAATTAGTTAATTATAGAAGG
CGGGGAGACGATGATGAAATAGCTGCTGTGAGAAGAGACAACGTCGAGAATGAAGGAGAT
CATTCAACAGTTCAAGAGACAGTTAGCGAAGATGAGGAGAGAGAAGAAAGTGTGGACTAC
GATGATGATTGCAGCAGTGACTCTAAGTACACAGATGAAGAAGACAGTGGTGATGATGTT
ACTGATGATTTAGGAAAAGAAACATCATAA

Peptide Sequence

PEP ID

XP_016465102.1
PEP Infomation

PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Nicotiana tabacum]
Sequence

MHIFLKISTKLLQSKSKPFNSLTWIPPLFLQSTKQMSQSTSIPRNQQRVRDHGYDDYMEI
EKKIRKVMKFQEQLLTQTNSMIPISRLDMLARRFGFKQYEAGKFILKFPHVFEVFEHPVQ
RILYCRLTHKALLQIEQEKLALLAQLPEAVTRLRKLLMLSNTGRLRLEHVRIARKEFGLP
DDFEFSVVLKYPMYFRLFDAKETRNKYIEVVEKDPMLAVCAVERVREKEYREKGGEEENV
RFYFRVNFPPGFKIGKYYKIAVWKWQRLPYWSPYEDISGYDLRSLEAQKRMEKRAVATIH
ELLSLTVEKKITLERIAHFRLAMDLPKKLKDFLLQHQGIFYISTRGNQGKLHTVFLREAY
RKGELIEPNDLYLARRRLAELVLMSPRKANMDKELVNYRRRGDDDEIAAVRRDNVENEGD
HSTVQETVSEDEEREESVDYDDDCSSDSKYTDEEDSGDDVTDDLGKETS

Transcript Sequence

Gene sequence data has not been registered.